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pumpster

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New DNA study on cats clarifies origins
« on: June 29, 2007, 06:21:08 AM »
NY Times 6/28
Scientists Link Housecats to Wildcat Subspecies


Some 10,000 years ago, somewhere in the Near East, an audacious wild cat crept into one of the crude villages of early human settlers, the first to domesticate wheat and barley. There she felt safe from her many predators in the region, such as hyenas and larger cats, and the rodents that infested the settlers’ homes and granaries were sufficient prey for her.

The Near Eastern Origin of Cat Domestication (Science)Seeing she was earning her keep, the settlers tolerated her, and their children greeted her kittens with delight.

At least five females, of the wildcat subspecies known as Felis silvestris lybica, accomplished this delicate transition from forest to village, scientists have concluded, based on new DNA research. And from these five matriarchs, all the world’s 600 million housecats are descended.

Carlos A. Driscoll of the National Cancer Institute and colleagues spent more than six years collecting species of wildcat from Scotland to Israel. He then analyzed the DNA of the wildcats, of many ordinary house cats and of the fancy cats that breeders started to develop in the 19th century.

Five subspecies of wildcat spread across the Old World. They are known as the European wildcat, the Near Eastern wildcat, the Southern African wildcat, the Central Asian wildcat and the Chinese desert cat. Their patterns of DNA fall into 5 clusters. The DNA of all house cats and fancy cats falls within the Near Eastern wildcat cluster, making clear that this subspecies is their ancestor, Dr. Driscoll and his colleagues report in a paper published online by Science.

The wildcat DNA closest to that of modern house cats came from 15 individuals collected in the remote deserts of Israel, the United Arab Emirates, Bahrain and Saudi Arabia, the researchers say.

The house cats in the study fell into five lineages, based on analysis of their mitochondrial DNA, which is passed down solely through the female line. Since the oldest known archaeological site with a cat burial is about 9,500 years old, the geneticists suggest that the founders of the five lineages lived around this time and were the first cats to be domesticated.

Wheat, rye and barley had been domesticated in the Near East by 10,000 years ago, so it seems likely that the granaries of early Neolithic villages harbored mice and rats, and that the settlers would have welcomed the cats’ help in controlling them.

Unlike other domestic animals, which were tamed by people, cats probably domesticated themselves, perhaps accounting for the haughty independence of their descendants. “The cats were adapting themselves to a new environment, so the push for domestication came from the cat side, not the human side,” Dr. Driscoll said.

Cats are “indicators of human cultural adolescence,” he remarked, since they entered human experience as people were making the difficult transition from hunting and gathering, their way of life for millions of years, to settled communities.

Until recently the cat was commonly believed to have been domesticated in ancient Egypt, where it was a cult animal. But three years ago a group of French archaeologists led by Jean-Denis Vigne discovered the remains of an eight-month-old cat buried with what was presumably its human owner at a Neolithic site in Cyprus. The Mediterranean island was settled by farmers from Turkey who brought their domesticated animals with them, presumably including cats, because there is no evidence of native wildcats in Cyprus.

The date of the burial, some 9,500 years ago, far precedes Egyptian civilization. Together with the new genetic evidence, it places the domestication of the cat in a different context, the beginnings of agriculture in the Near East, and probably in the villages of the Fertile Crescent, the belt of land that stretches up through the countries of the eastern Mediterranean and down through what is now Iraq.


Dr. Stephen O’Brien, an expert on the genetics of the cat family and a co-author of the Science report, described the domestication of the cat as “the beginning of one of the major experiments in biological history,” because the number of house cats in the world now exceeds half a billion, while most of the 36 other species of cat, and many wildcats, are now threatened with extinction.

So a valuable outcome of the new study is the discovery of genetic markers in the DNA that distinguish native wildcats from the house cats and feral domestic cats with which they often interbreed. In Britain and other countries, true wildcats may be highly protected by law but stray cats are not.





Genetic Research Suggests Felines 'Domesticated Themselves'


Washington Post
Friday, June 29, 2007

Your hunch is correct. Your cat decided to live with you, not the other way around. The sad truth is, it may not be a final decision.

But don't take this feline diffidence personally. It runs in the family. And it goes back a long way -- about 12,000 years, actually.

Researchers and regulators are reshaping the landscape of science, medicine and health, engendering hope -- and disquiet -- for the future of humanity.

Those are among the inescapable conclusions of a genetic study of the origins of the domestic cat, being published today in the journal Science.

The findings, drawn from an analysis of nearly 1,000 cats around the world, suggest that the ancestors of today's tabbies, Persians and Siamese wandered into Near Eastern settlements at the dawn of agriculture. They were looking for food, not friendship.

They found what they were seeking in the form of rodents feeding on stored grain. They stayed for 12 millennia, although not without wandering off now and again to consort with their wild cousins.

The story is quite different from that of other domesticated animals: cattle, sheep, goats, horses -- and dogs, cats' main rivals for human affection. It may even provide insight on the behavior of the animal that, if not man's best friend, is certainly his most inscrutable.

"It is a story about one of the more important biological experiments ever undertaken," said Stephen J. O'Brien, a molecular geneticist at the National Cancer Institute's laboratory in Frederick, Md., and one of the supervisors of the project.

"We think what happened is that cats sort of domesticated themselves," said Carlos A. Driscoll, the University of Oxford graduate student who did the work, which required him, among other things, to befriend feral cats on the Mongolian steppes.

Today, there are 37 species in the family Felidae, ranging from lions through ocelots down to little Mittens. All domestic cats are descended from the species Felis sylvestris ("cat of the woods"), which goes by the common name "wildcat."

The species is indigenous to Europe, the Middle East and East Asia. The New World, Japan and Oceania lack wildcats. North America's closest counterpart is the lynx.

There are five subspecies of wildcats, and they look very much like many pet cats, particularly non-pedigree ones. The Scottish wildcat, for example, is indistinguishable from a barn cat with a mackerel tabby coat. These animals, however, are a true wild species. They are not escaped pets that have become feral, or reverted to the wild.

Driscoll and his collaborators, who included Oxford zoologist David Macdonald, took blood samples and ear punch biopsies from all wildcat subspecies as well as from fancy-breed cats, non-pedigree pet cats and feral cats. They analyzed two kinds of genetic fingerprints: nuclear DNA, which carries nearly all of an animal's genes and reflects inheritance from both parents, and mitochondrial DNA, which exists outside the cell nucleus, carries only a few genes and descends through the generations only from mothers.

Both fingerprints showed that domesticated cats around the world are most closely related to the wildcat subspecies (called lybica) that lives in the Near East. (War prevented the sampling of Iraqi wildcats, but the researchers believe those animals are of the same species as animals they collected samples from in Israel and on the Arabian Peninsula.)

One might think that people in each region would have domesticated their local wildcats. In that case, European pet cats today would genetically most closely resemble European wildcats and Chinese cats would be descended from East Asian wildcats. But that isn't the case.
 
Why not?

Genetics can't answer the question, but history and archaeology can provide a good guess.

Large-scale grain agriculture began in the Near East's Fertile Crescent. With the storage of surplus grain came mice, which fed on it and contaminated it.

Settled farming communities with dense rodent populations were a new habitat. Wildcats came out of the woods and grasslands to exploit it. They may have lived close to man -- but not petting-close -- for centuries.

Eventually, though, natural selection favored individual animals whose genetic makeup by chance made them tolerant of human contact. Such behavior provided them with things -- a night indoors, the occasional bowl of milk -- that allowed them to out-compete their scaredy-cat relatives.

For people, it was a great package -- agriculture, food surplus (and all the civilizing effects that came with it), with domesticated cats thrown in to protect the wealth by eating the mice.

"When that technology was transferred to other cultures, so were the cats," said Robert Wayne, an evolutionary biologist at the University of California in Los Angeles. Therein lies the reason other cultures didn't domesticate local wildcats, he said. "Why reinvent the wheel?"

This is not true with other acts of animal domestication.

Genetic studies have shown that cattle, goats, sheep, pigs and water buffalo were all domesticated at least twice in independent events. With horses, it happened many times.

The consequence of one other feline behavior -- the average cat's uncertainty about whether it wants to be indoors or out -- was also written in the genes Driscoll studied.

He found that a significant fraction of wildcats in Europe, southern Africa and central Asia were hybrids. They carried genetic evidence of having tomcatted around from time to time with their domesticated relatives.

pumpster

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Re: New study on cats
« Reply #1 on: June 29, 2007, 06:29:31 AM »
The origin of the cat
Published: June 28, 2007 - 02:27PM CT

Some say that there are two kinds of people in the world: dog people and cat people. While I don’t want to foster any kind of segregative animosity between fellow humans, it does seem to me that dogs, despite their fewer numbers as pets, tend to have the bigger mindshare. Dogs, not cats, are described as man’s best friend, and you hear of dog-related genetics a fair bit more than you do cat-related science. Not today though.

The reason for this disparity is that although there are hundreds of different varieties of domesticated cats, they don’t show the same spread of sizes and shapes we see in dogs. (Apparently, no one other than me thinks the idea of a Great Dane-sized cat is a good one.) What we do know is that cats and humans have lived together for almost 10,000 years. The earliest evidence of cats and humans together was found in Cyprus and dated at around 9,500 years ago. As to the origins of these early domestic cats, not a huge amount has been known. There are a number of subspecies of Felis silvestris in the wild: F. s. silvestris (Europe), F. s. lybica (Africa and the Near East), F. s. ornate (Middle East and Central Asia), and possibly F. s. bieti (China, although some argue this is a separate species). So which one of these groups did the world’s most numerous pets derive from? A new multinational research effort has found the answer, and it’s published in Science online today.

Carlos Driscoll and his colleagues across the world have collected DNA samples from almost 1,000 different individual cats and looked at different genetic markers to identify common ancestry patterns between domestic cats, purebreds, and wild cats. The data they gathered shows that domestic and purebred cats fall into the same clade as wildcats from the Near East, which matches up well with the archaeological data from Cyprus.

The researchers also worked out the approximate age of the species by looking at the genetic sequences with respect to the rate of mutation in order to calculate a molecular clock. It appears that there were five distinct maternal lineages within the domestic cat clade, as early as 100,000 years ago, predating any evidence of human domestication by an order of magnitude.  These lineages all appear within the population of domestic cats.

So there you have it: your house cat, just like our modern civilization, most of our grain crops, and the majority of our domesticated livestock has its origins in the Fertile Crescent. 

pumpster

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Re: New study on cats
« Reply #2 on: June 29, 2007, 06:34:41 AM »
Why the cat was 'tamed' --but stayed aloof

Chicago Tribune
Published June 29, 2007


Inside the cells of every pet cat lies a history book, a story detailing the journey from the wilds of Asia to the comforts of a windowsill perch.

Combining the fields of genetics and archeology, scientists have cracked open the book to find that cat domestication occurred near the beginning of human civilization, long before many previous archeological estimates. The circumstances of this early association between man and cat may explain the friendly but tenuous truce between felines and humans.

Published Friday in the journal Science, the research used DNA from modern house cats to trace the origin of domestic cats back to a specific time and region that coincided with the settlement of humans in the Middle East region known as the Fertile Crescent.

Geneticists studied cats as a domestic pet unique in its persistent similarity to its wild ancestors. Modern cats were traced to a common ancestor: a particular species of wildcat that still lives in the same region.

"Our study was able to localize it down to one subspecies whose range included the Near East," said Oxford University zoologist Carlos Driscoll. "Within the Near East was the Fertile Crescent, which is the most likely spot for domestication to have occurred."

Scientists have long debated whether cats were independently domesticated at several regions and points in time, or whether they were first kept as pets in one civilization before being spread around the world. The identification of a single ancestral species for modern house cats supports the single-origin theory.

Driscoll and his colleagues, in a new process known as genomic archeology, compared genetic information from domesticated cats around the world to DNA from various wildcat species. To their surprise, all domestic cats studied shared certain gene sequences with the Near Eastern variety of wildcat.

Though genetic comparisons can reveal where the process likely occurred, it's less reliable as a marker of when humans began keeping cats as companions.

"The molecular clock we're using is not ticking fast enough to make estimates in that recent evolutionary time," Driscoll said. "It'd be like trying to measure a drop of water falling from a spigot with the minute hand of your watch."

In 2004, French researchers found the remains of a cat buried with a human who died roughly 9,500 years ago on the island of Cyprus, where there are no native wildcat species.

This discovery placed the association between humans and cats much further back in history than previously thought. Earlier theories speculated that Egyptians were responsible for cat domestication 4,000 to 5,000 years ago, based on the animal's appearance in art and tombs from the era.

Dating the origin of domestic cats earlier, and placing this process in the Middle East, suggests that cats played an important role in the lives of the first farmers.

"Mankind settled down into agricultural villages for the first time about 12,000 years ago, developing many domestic cereals and plants," said Stephen O'Brien, another of the study's authors. "That's about the time and exact same place that cats walked out of woods and did something unusual: act friendly."

The transition of humans from nomadic hunter-gatherers to stationary farmers drew the attention of rodents who fed on the villages' food stores. These pests, in turn, drew wildcats toward this early human society.

"Cats provided two things to early farmers: companionship and the ability to dispatch rodents that were attacking grain stores, which was critical for early farmers to get through winters," O'Brien said.

This cooperative relationship may explain why domestic cats, unlike dogs and their ancestral relatives, wolves, have not evolved very far from wildcat species.

Modern domestic cats are similar physically to wildcats, save for a wider variety of fur colors that have come from recent breeding practices. Genetically, they are "almost indistinguishable," O'Brien said, "like the difference between Italians and Germans."

In terms of behavior, cats are also different from most species kept by humans for pets or agriculture.

"Domestication isn't a one-size-fits-all process," said zooarcheologist Melinda Zeder of the Smithsonian National Museum of Natural History. "Cats are different in that they really retain their wariness, their aloofness, their prowess as hunters."

In fact, cats may not have even been passive participants in the process of domestication. O'Brien describes the integration of cats into human culture as "one of the most successful biological experiments ever undertaken" by an animal, pointing out that while the domestic cat is thriving, with a population as high as 60 million in America alone, many wildcat species are endangered.
 
 "I think the attitude that [domestication is] human mastery over nature, and that they were bending animals and plants to their will, is really outmoded," Zeder said.

"Really, domestication needs to be looked at as a mutualistic relationship. The cats may have had the upper hand in this relationship in the beginning and retained it to this day."

Cats' ancestry Researchers have used DNA from modern house cats to trace the origin of domestic cats to the area in the Middle East called the Fertile Crescent.

50 million years ago: Some scientists believe that cats evolved from a genus of weasellike animals called Miacis.

40 million years ago: Earliest form of catlike creature appears.

9,500 years ago: Cat and human remains are buried together in Cyprus, the earliest evidence of domestication.

3500 B.C.: Egyptians tame a wildcat, which researchers thought previously was the earliest evidence of domestication.

1500 B.C.: Egyptians begin to consider cats sacred.

1000 B.C.: Greek and Phoenician traders are believed to have brought domestic cats to Europe and the Middle East.

c.500-c.1450: In the Middle Ages, Europeans came to consider cats a symbol of evil.

1800s: As European settlers head west, they bring along the ancestors of most cats in the U.S. and Canada today.

Sources: World Book, Encyclopedia Britannica Chicago Tribune
 


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Re: New DNA study on cats clarifies origins
« Reply #3 on: June 29, 2007, 06:44:50 AM »
A Fertile Domestication of Cats
ScienceNOW Daily News
28 June 2007

Cats will always remain mysterious animals--but exactly where they came from is no longer a riddle. A genetic study has shown that the ancestors of all of today's domestic cats prowled the Near East. The work bolsters the notion that cats became useful to humans when agriculture started--which scientists believe happened in the Near East--forcing people to protect grain stores from rodents.
"There's been an awful lot of guesswork on how one of the most interesting experiments in natural history took place," says Stephen J. O'Brien, chief of the Laboratory of Genomic Diversity at the National Cancer Institute in Bethesda, Maryland, an author on the study. Based on morphology, scientists already presumed that wildcats--as opposed to other species such as ocelots and pumas--were the progenitors of today's pussycats. The controversy, O'Brien says, concerned where domestication occurred and how many times it might have happened.

Wildcats are a single Old World species. Five subspecies live in Europe, sub-Saharan Africa, China, Central Asia, and the Near East. The researchers collected genetic material from 979 modern-day cats, domestic and wild, from three continents. Their analysis indicates that the common ancestors of all domesticated cats lived in the Near East some 130,000 years ago. They were wildcats living in the Fertile Crescent--the area extending from the Eastern Mediterranean around Turkey and down into Mesopotamia--"exactly the place where humanity settled down to agriculture ten to twelve thousand years ago," says O'Brien. The team found five lineages of mitochondrial DNA (mtDNA) in modern felines. Because of this variation, the researchers believe domestication occurred a half-dozen times or so in the Middle East.

This analysis fits with the oldest archaeological evidence for cat domestication--in 2001, scientists in Cyprus unearthed a cat skeleton that had been buried with a human 9500 years ago (Science, 9 April 2004, p. 189). It also fits with the fact that "domestication of pretty much everything else in the world came from the Fertile Crescent," says Carlos Driscoll of Oxford University, U.K., the first author on the study, which appeared online in Science today.

Geneticist Robert Wayne of the University of California, Los Angeles, says, "the data are very convincing." He says it's noteworthy that domestication took place in a relatively limited area, since animals such as pigs, cattle, and horses usually show more complex origins. "This suggests that cats were domesticated for a geographically specific purpose--maintaining rodent free grain stores--unique to the Fertile Crescent," he says.

The next puzzle, says O'Brien, is locating the genetic mutations responsible for making cats tame. Finding these "tameness genes" is one of the goals of a cat genome project currently being conducted by a consortium that O'Brien leads.